miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040725
species: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395r (MI0005633)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCTTTGAACGCTTCATGC

mismatches: 2
bulges: 0

View larger
pre-miRNA
TCTTAGAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATCTATTTGGTCTAAAGTCCATTAGAAAAGATAGCCATTTTTTCAATGAAGTGTTTGGGG
GAACTC
TTGGA


dot-bracket secondary structure
(((.((((((((((..((((((((((....((((((..((((((...(((.(....).))).......))))))..))))))...))))))))))..)))
))))))
).)))



SIMILARITIES
miRBase mtr-MIR395n: 2e-52

PMRD mtr-miR395n: 2e-52

microPC miR395: 0.00002
UniProt no hits

RFAM mir-395: 3e-57

Identical with: mtr-MIR395l from miRBase (MNEST040719)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Bonnet E, Unpublished (2007).,




Liczniki na strone;